Heat map for ssaG expression in 4/74 and D23580

Absolute Expression Levels (transcripts per million)

query		EEP	MEP	LEP	ESP	LSP		25°C		NaCl shock	Bile shock	Low Fe2+ shock	Anaerobic shock		Anaerobic growth	Oxygen shock		NonSPI2	InSPI2	Peroxide shock (InSPI2)	Nitric oxide shock (InSPI2)		Macrophage		EEP	MEP	LEP	ESP	LSP		25°C		NaCl shock	Bile shock	Low Fe2+ shock	Anaerobic shock		Anaerobic growth	Oxygen shock		NonSPI2	InSPI2	Peroxide shock (InSPI2)	Nitric oxide shock (InSPI2)		Macrophage		Systematic ID SL1344	Gene name SL1344	Gene_synonym SL1344	Strand SL1344	Location of Start ST4/74	Location of End ST4/74	Length (nt) in ST4/74	Type SL1344	Chromosome / Plasmid SL1344	Note SL1344	EMBL product SL1344	Genbank product SL1344	Genbank note SL1344	PubMed ID SL1344	Systematic Name D23580	Common Name D23580	Gene_synonym D23580	strand D23580	start D23580	end D23580	gene length D23580	molecule D23580	Genome Element Type D23580	Note D23580	EC D23580	GenBank Accession No. D23580	Dbid D23580	Description in Genbank D23580	LT2 orthologue	14028 orthologue	ST4-74 orthologue	UK-1 orthologue	Alternate SL1344 identifier
ssaG		6	3	9	77	12		2		7	4	7	6		11	10		11	3,263	990	596		2,503		7	2	5	133	18		2		3	1	1	4		9	7		16	2,215	1,262	1,962		1,343		SL1344_1340	ssaG		+	1446389	1446604	216	CDS	chromosome		Type III secretion system apparatus	type III secretion system apparatus protein			STMMW_14111	ssaG		+	1486051	1486266	216	chromosome	CDS			CBG24422.1	GI:261246612	putative pathogenicity island protein	STM1406	STM14_1702	STM474_1412	STMUK_1372	SL1340

view in JBrowse :

download data:

Intra-strain Relative Expression Levels (fold-change)

query		EEP	MEP	LEP	ESP	LSP		MEP	NaCl shock	Bile shock	Low Fe2+ shock	Anaerobic shock		Anaerobic growth	Oxygen shock		InSPI2	Peroxide shock (InSPI2)	Nitric oxide shock (InSPI2)		NonSPI2	InSPI2		ESP	Macrophage		EEP	MEP	LEP	ESP	LSP		MEP	NaCl shock	Bile shock	Low Fe2+ shock	Anaerobic shock		Anaerobic growth	Oxygen shock		InSPI2	Peroxide shock (InSPI2)	Nitric oxide shock (InSPI2)		NonSPI2	InSPI2		ESP	Macrophage		Systematic ID SL1344	Gene name SL1344	Gene_synonym SL1344	Strand SL1344	Location of Start ST4/74	Location of End ST4/74	Length (nt) in ST4/74	Type SL1344	Chromosome / Plasmid SL1344	Note SL1344	EMBL product SL1344	Genbank product SL1344	Genbank note SL1344	PubMed ID SL1344	Systematic Name D23580	Common Name D23580	Gene_synonym D23580	strand D23580	start D23580	end D23580	gene length D23580	molecule D23580	Genome Element Type D23580	Note D23580	EC D23580	GenBank Accession No. D23580	Dbid D23580	Description in Genbank D23580	LT2 orthologue	14028 orthologue	ST4-74 orthologue	UK-1 orthologue	Alternate SL1344 identifier
ssaG		1	1	1	7.72	1.24		1	1	1	1	1		1	0.9		1	0.3	0.18		1	299.9		1	32.43		1	1	1	13.34	1.79		1	1	1	1	1		1	1		1	0.57	0.89		1	136.47		1	10.07		SL1344_1340	ssaG		+	1446389	1446604	216	CDS	chromosome		Type III secretion system apparatus	type III secretion system apparatus protein			STMMW_14111	ssaG		+	1486051	1486266	216	chromosome	CDS			CBG24422.1	GI:261246612	putative pathogenicity island protein	STM1406	STM14_1702	STM474_1412	STMUK_1372	SL1340

download data:

Inter-strain Relative Expression Levels (fold-change)

query		EEP	MEP	LEP	ESP	LSP		25°C		NaCl shock	Bile shock	Low Fe2+ shock	Anaerobic shock		Anaerobic growth	Oxygen shock		NonSPI2	InSPI2	Peroxide shock (InSPI2)	Nitric oxide shock (InSPI2)		Macrophage		Systematic ID SL1344	Gene name SL1344	Gene_synonym SL1344	Strand SL1344	Location of Start ST4/74	Location of End ST4/74	Length (nt) in ST4/74	Type SL1344	Chromosome / Plasmid SL1344	Note SL1344	EMBL product SL1344	Genbank product SL1344	Genbank note SL1344	PubMed ID SL1344	Systematic Name D23580	Common Name D23580	Gene_synonym D23580	strand D23580	start D23580	end D23580	gene length D23580	molecule D23580	Genome Element Type D23580	Note D23580	EC D23580	GenBank Accession No. D23580	Dbid D23580	Description in Genbank D23580	LT2 orthologue	14028 orthologue	ST4-74 orthologue	UK-1 orthologue	Alternate SL1344 identifier
ssaG		1	1	1	1.61	1.41		1		1	1	1	1		0.87	1		1.43	0.62	1.12	2.94		0.4		SL1344_1340	ssaG		+	1446389	1446604	216	CDS	chromosome		Type III secretion system apparatus	type III secretion system apparatus protein			STMMW_14111	ssaG		+	1486051	1486266	216	chromosome	CDS			CBG24422.1	GI:261246612	putative pathogenicity island protein	STM1406	STM14_1702	STM474_1412	STMUK_1372	SL1340

download data: