R-Studio Workshop: starting Monday, 18th Apr, every weekday from 10 - noon.

### Location

East End 4 Mac Lab (map)

→ The East End Mac Lab is situated in the basement of the Hamilton building, below the Smurfit Institute of Genetics.

To get there, please enter the Hamilton concourse through the large sliding doors between Academic Registry (previously Biochemistry) and Pharmacology. Turn right and after 50 metres go down the steps to your right. At the bottom of the steps turn left. The Mac Lab is the third door on your left (beside LTEE3). Look out for signs ('R Workshop') indicating directions.

### Material

The final set of slides will be made available for download before each lesson.

**Mechanics of programming in R, part I:**- PowerPoint slides: PPTX file.
- PDF for print-out (6 slides per page): PDF file.
- Data sets: gene_expression_disease_sex.txt, colon_cancer_data_set.txt
- Exercises: lecture_1_problems.pdf
- Solutions: lecture_1_solutions.R

**Mechanics of programming in R, part II:**- PowerPoint slides: PPTX file.
- PDF for print-out (6 slides per page): PDF file.
- Exercises: lecture_2_problems.pdf
- Solutions: lecture_2_solutions.R

**Hypothesis testing**

Concepts, normality, F-test, t-test, wilcoxon test, correlation

- PowerPoint slides: PPTX file.
- PDF for print-out (6 slides per page): PDF file.
- Exercises: lecture_3_problems.pdf
- Solutions: lecture_3_solutions.R

**Experimental design & ANOVA**

Power calculations, ANOVA

- PowerPoint slides: PPTX file.
- PDF for print-out (6 slides per page): PDF file.
- Exercises: lecture_4_problems.pdf
- Data set: colon_cancer_p53_data_set.txt
- Solutions: lecture_4_solutions.R

**Introducing Multivariate Analysis**

Clustering, hierarchical, k-means, heatmaps

- PowerPoint slides: PPTX file.
- PDF for print-out (6 slides per page): PDF file.
- Exercises: lecture_5_problems.pdf
- Solutions: lecture_5_solutions.pptx

### Survey

Please fill out a short survey to provide feed-back on the workshop.

### Software

If you are planning on bringing your own laptop, please install RStudio.

### Etherpad

For questions and comments: online document

Last modified: Thu 21 Apr 2016 16:46:02 IST by Karsten Hokamp