Heat map for expression of ssaG expression in strains 4/74 and D23580

Absolute Expression Levels (transcripts per million)

query		EEP	MEP	LEP	ESP	LSP		25°C		NaCl shock	Bile shock	Low Fe2+ shock	Anaerobic shock		Anaerobic growth	Oxygen shock		NonSPI2	InSPI2	Peroxide shock (InSPI2)	Nitric oxide shock (InSPI2)		Macrophage		EEP	MEP	LEP	ESP	LSP		25°C		NaCl shock	Bile shock	Low Fe2+ shock	Anaerobic shock		Anaerobic growth	Oxygen shock		NonSPI2	InSPI2	Peroxide shock (InSPI2)	Nitric oxide shock (InSPI2)		Macrophage		Systematic ID SL1344	Gene name SL1344	Gene_synonym SL1344	Strand SL1344	Location of Start ST4/74	Location of End ST4/74	Length (nt) in ST4/74	Type SL1344	Chromosome / Plasmid SL1344	Note SL1344	EMBL product SL1344	Genbank product SL1344	Genbank note SL1344	PubMed ID SL1344	Systematic Name D23580	Common Name D23580	Gene_synonym D23580	strand D23580	start D23580	end D23580	gene length D23580	molecule D23580	Genome Element Type D23580	Note D23580	EC D23580	GenBank Accession No. D23580	Dbid D23580	Description in Genbank D23580	LT2 orthologue	14028 orthologue	ST4-74 orthologue	UK-1 orthologue	Alternate SL1344 identifier
ssaG		6	3	9	77	12		2		7	4	7	6		11	10		11	3,263	990	596		2,503		7	2	5	133	18		2		3	1	1	4		9	7		16	2,215	1,262	1,962		1,343		SL1344_1340	ssaG		+	1446389	1446604	216	CDS	chromosome		Type III secretion system apparatus	type III secretion system apparatus protein			STMMW_14111	ssaG		+	1486051	1486266	216	chromosome	CDS			CBG24422.1	GI:261246612	putative pathogenicity island protein	STM1406	STM14_1702	STM474_1412	STMUK_1372	SL1340
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Intra-strain Relative Expression Levels (fold-change) query EEP MEP LEP ESP LSP MEP NaCl shock Bile shock Low Fe2+ shock Anaerobic shock Anaerobic growth Oxygen shock InSPI2 Peroxide shock (InSPI2) Nitric oxide shock (InSPI2) NonSPI2 InSPI2 ESP Macrophage EEP MEP LEP ESP LSP MEP NaCl shock Bile shock Low Fe2+ shock Anaerobic shock Anaerobic growth Oxygen shock InSPI2 Peroxide shock (InSPI2) Nitric oxide shock (InSPI2) NonSPI2 InSPI2 ESP Macrophage        Systematic ID SL1344 Gene name SL1344 Gene_synonym SL1344 Strand SL1344 Location of Start ST4/74 Location of End ST4/74 Length (nt) in ST4/74 Type SL1344 Chromosome / Plasmid SL1344 Note SL1344 EMBL product SL1344 Genbank product SL1344 Genbank note SL1344 PubMed ID SL1344 Systematic Name D23580 Common Name D23580 Gene_synonym D23580 strand D23580 start D23580 end D23580 gene length D23580 molecule D23580 Genome Element Type D23580 Note D23580 EC D23580 GenBank Accession No. D23580 Dbid D23580 Description in Genbank D23580 LT2 orthologue 14028 orthologue ST4-74 orthologue UK-1 orthologue Alternate SL1344 identifier                                                                                                                                                                           ssaG  1 1 1 7.72 1.24   1 1 1 1 1   1 0.9   1 0.3 0.18   1 299.9   1 32.43 1 1 1 13.34 1.79   1 1 1 1 1   1 1   1 0.57 0.89   1 136.47   1 10.07 SL1344_1340 ssaG + 1446389 1446604 216 CDS chromosome Type III secretion system apparatus type III secretion system apparatus protein STMMW_14111 ssaG + 1486051 1486266 216 chromosome CDS CBG24422.1 GI:261246612 putative pathogenicity island protein STM1406 STM14_1702 STM474_1412 STMUK_1372 SL1340 download data: Inter-strain Relative Expression Levels (fold-change) query EEP MEP LEP ESP LSP 25°C NaCl shock Bile shock Low Fe2+ shock Anaerobic shock Anaerobic growth Oxygen shock NonSPI2 InSPI2 Peroxide shock (InSPI2) Nitric oxide shock (InSPI2) Macrophage        Systematic ID SL1344 Gene name SL1344 Gene_synonym SL1344 Strand SL1344 Location of Start ST4/74 Location of End ST4/74 Length (nt) in ST4/74 Type SL1344 Chromosome / Plasmid SL1344 Note SL1344 EMBL product SL1344 Genbank product SL1344 Genbank note SL1344 PubMed ID SL1344 Systematic Name D23580 Common Name D23580 Gene_synonym D23580 strand D23580 start D23580 end D23580 gene length D23580 molecule D23580 Genome Element Type D23580 Note D23580 EC D23580 GenBank Accession No. D23580 Dbid D23580 Description in Genbank D23580 LT2 orthologue 14028 orthologue ST4-74 orthologue UK-1 orthologue Alternate SL1344 identifier                                                                                                                     ssaG  1 1 1 1.61 1.41   1   1 1 1 1   0.87 1   1.43 0.62 1.12 2.94   0.4 SL1344_1340 ssaG + 1446389 1446604 216 CDS chromosome Type III secretion system apparatus type III secretion system apparatus protein STMMW_14111 ssaG + 1486051 1486266 216 chromosome CDS CBG24422.1 GI:261246612 putative pathogenicity island protein STM1406 STM14_1702 STM474_1412 STMUK_1372 SL1340 download data: Results provided by the Hinton Lab, automatically generated on Wed Dec 6 10:37:16 2023 We are very grateful to Joe Grissom and Tyrrell Conway for sharing the code that drives this compendium database, and was originally designed for use at GenExpDB.