Absolute Expression Levels (transcripts per million)
query | |
WT MEP |
Δdam MEP |
|
WT IEP |
ΔhilA IEP |
ΔhilC IEP |
ΔhilD IEP |
ΔhilE IEP |
|
WT ESP |
ΔhilD ESP |
ΔbarA-sirA ESP |
ΔfliZ ESP |
Δfur ESP |
Δhfq ESP |
|
WT LSP |
ΔrpoE LSP |
ΔrpoS LSP |
|
WT InSPI2 |
ΔhilD InSPI2 |
ΔphoB-R InSPI2 |
ΔphoP-Q InSPI2 |
ΔompR-envZ InSPI2 |
ΔslyA InSPI2 |
ΔssrA InSPI2 |
ΔssrB InSPI2 |
ΔssrA-B InSPI2 |
|
Common gene name |
Gene Synonym |
Type |
Start position (4/74) |
End position (4/74) |
Strand |
Product (EMBL DB) |
4-74 ID |
SL1344 Locus ID |
ssaG | |
4 |
2 |
|
2 |
5 |
3 |
5 |
7 |
|
88 |
4 |
2 |
15 |
183 |
9 |
|
11 |
16 |
471 |
|
3,309 |
2,441 |
3,559 |
174 |
5 |
32 |
19 |
7 |
7 |
|
ssaG |
|
CDS |
1446389 |
1446604 |
+ |
Type III secretion system apparatus |
STM474_1412 |
SL1344_1340 |
|
| | | | | | | | | |
view in JBrowse : | |
download data: |
|
Relative Expression Levels (fold-change)
query | |
WT MEP |
WT vs Δdam |
|
WT IEP |
WT vs ΔhilA |
WT vs ΔhilC |
WT vs ΔhilD |
WT vs ΔhilE |
|
WT ESP |
WT vs ΔhilD |
WT vs ΔbarA-sirA |
WT vs ΔfliZ |
WT vs Δfur |
WT vs Δhfq |
|
WT LSP |
WT vs ΔrpoE |
WT vs ΔrpoS |
|
WT InSPI2 |
WT vs ΔhilD InSPI2 |
WT vs ΔphoB-R |
WT vs ΔphoP-Q |
WT vs ΔompR-envZ |
WT vs ΔslyA |
WT vs ΔssrA |
WT vs ΔssrB |
WT vs ΔssrA-B |
|
Common gene name |
Gene Synonym |
Type |
Start position (4/74) |
End position (4/74) |
Strand |
Product (EMBL DB) |
4-74 ID |
SL1344 Locus ID |
ssaG | |
1 |
1 |
|
1 |
1 |
1 |
1 |
1 |
|
1 |
0.11 |
0.11 |
0.17 |
2.07 |
0.11 |
|
1 |
1.4 |
41.13 |
|
1 |
0.74 |
1.08 |
0.05 |
0 |
0.01 |
0.01 |
0 |
0 |
|
ssaG |
|
CDS |
1446389 |
1446604 |
+ |
Type III secretion system apparatus |
STM474_1412 |
SL1344_1340 |
|
| | | | | | | | | |
download data: |
|
Protocols for Suite of 22 environmental conditions: Excel file, 408KB
Results provided by the Hinton Lab, automatically generated on Tue Mar 19 13:18:13 2024
We are very grateful to Joe Grissom and Tyrrell Conway for sharing the code that drives this compendium database, and was originally designed for use at GenExpDB.
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