Reference:

PDF (4.6 MB), supplement (2 MB) 		Welcome to SalCom, the HintonLab
Salmonella enterica serovar Typhimurium Gene Expression Compendium
Columns of the Heat Maps can be sorted by value - just click on the headers
(° rotated)
Instructions:  Search by gene, locus or location (multiple entries separated by comma or space, use '*' for wild-card).
*To start:  enter query or select Example: ssaG • STM4509 • prgH,ssaG,mgtC • motility genes • SPI1 • SPI2 • SPI1 & 2 effectors •
SPI3 • SPI4 • SPI5 • SPI6 • SPI9 • SPI11 • SPI12 + oaf O-antigen locus • SPI13 • SPI14 • SPI16 • sRNAs

Heat map for ssaG expression in Kroeger et al., 2013

Absolute Expression Levels (transcripts per million)

query
EEP
MEP
LEP
ESP
LSP
25°C
Cold shock (15°C)
pH3 shock
pH5.8 shock
NaCl shock
Bile shock
Low Fe2+ shock
Anaerobic shock
Anaerobic growth
Oxygen shock
NonSPI2
InSPI2
InSPI2 LowMg2+
Peroxide shock (InSPI2)
Nitric oxide shock (InSPI2)
          Common gene name Gene Synonym Type Start position (4/74) End position (4/74) Strand Product (EMBL DB) 4-74 ID SL1344 Locus ID
ssaG  6 4 10 80 13   3   4 4 4 6 4 7 6   12 10   10 3,244 3,587 1,061 626 - ssaG CDS 1446389 1446604 + Type III secretion system apparatus STM474_1412 SL1344_1340

coverage legend

view in JBrowse :view Kroeger <i>et al.</i>, 2013 coverage data in JBrowse  
 download data:download data as tab-delimited text file


Relative Expression Levels (fold-change)

query
EEP
MEP
LEP
ESP
LSP
MEP
Cold shock (15°C)
pH3 shock
pH5.8 shock
NaCl shock
Bile shock
Low Fe2+ shock
Anaerobic shock
Anaerobic growth
Oxygen shock
InSPI2
InSPI2 LowMg2+
Peroxide shock (InSPI2)
Nitric oxide shock (InSPI2)
NonSPI2
InSPI2
          Common gene name Gene Synonym Type Start position (4/74) End position (4/74) Strand Product (EMBL DB) 4-74 ID SL1344 Locus ID
ssaG  1 1 1 7.98 1.31   1 1 1 1 1 1 1 1   1 0.87   1 1.11 0.33 0.19   1 319.92 ssaG CDS 1446389 1446604 + Type III secretion system apparatus STM474_1412 SL1344_1340

ratio legend

download data:download data as tab-delimited text file


Results provided by the Hinton Lab, automatically generated on Sat Apr 20 00:20:57 2024
We are very grateful to Joe Grissom and Tyrrell Conway for sharing the code that drives this compendium database, and was originally designed for use at GenExpDB.